claml-standard

Convert a ClaML file to a FHIR CodeSystem

This plugin is based on 'fhir-claml' by the Australian e-Health Research Center (AEHRC) at CSIRO, Australia. See https://github.com/aehrc/fhir-claml for more information.

The arguments --display-rubric, --designation-rubric, --exclude-class-kind can include a comma-separated list to provide multiple arguments. Example: --display-rubric 'foo,bar'

Command line usage

/*^babelfsh
claml-standard
   --path PATH [--definition-rubric DEFINITION_RUBRIC]
   [--designation-rubric DESIGNATION_RUBRIC] [--display-rubric DISPLAY_RUBRIC]
   [--dont-apply-modifiers] [--exclude-class-kind EXCLUDE_CLASS_KIND]
   [--exclude-rubric-properties EXCLUDE_RUBRIC_PROPERTIES] [--help]
   [--ignore-meta-codes IGNORE_META_CODES] [--include-kindless-classes]
   [--map-all-meta-to-properties]
   [--meta-to-provide-renamed META_TO_PROVIDE_RENAMED]
   [--meta-to-provide-unmapped META_TO_PROVIDE_UNMAPPED]
   [--rubric-to-property-renamed RUBRIC_TO_PROPERTY_RENAMED]
   [--rubric-to-property-unmapped RUBRIC_TO_PROPERTY_UNMAPPED]
^babelfsh*/

Command line argument reference

Argument name	Description
--path PATH -p PATH Required	Path to the CLAML file
--definition-rubric DEFINITION_RUBRIC --def-rub DEFINITION_RUBRIC	The ClaML rubric that contains the concepts' definitions. Default is 'definition'
--designation-rubric DESIGNATION_RUBRIC --des-rub DESIGNATION_RUBRIC	A list of ClaML rubrics that contain the concepts' synonyms. Default is empty.
--display-rubric DISPLAY_RUBRIC --dis-rub DISPLAY_RUBRIC	A comma-separated list of ClaML rubric/s that might contain the concepts' displays. The first populated rubric in the list that is present on a class will be used as the concept's display text. Subsequent rubrics in the list will be used as designations. Default is 'preferred'
--dont-apply-modifiers --apply-modifiers	Whether to apply modifiers (default is not to apply them)
--exclude-class-kind EXCLUDE_CLASS_KIND	The class kind to exclude
--exclude-rubric-properties EXCLUDE_RUBRIC_PROPERTIES	The rubrics to exclude in the creation of concept properties
--help -h	show this help message and exit
--ignore-meta-codes IGNORE_META_CODES	A list of meta codes to ignore
--include-kindless-classes --exclude-kindless-classes	Whether to include kindless classes. Default is to include them.
--map-all-meta-to-properties	Map all meta to properties with the same name
--meta-to-provide-renamed META_TO_PROVIDE_RENAMED	--meta-to-property-renamed
--meta-to-provide-unmapped META_TO_PROVIDE_UNMAPPED	--meta-to-property-passthrough
--rubric-to-property-renamed RUBRIC_TO_PROPERTY_RENAMED	--rubric-to-property-renamed
--rubric-to-property-unmapped RUBRIC_TO_PROPERTY_UNMAPPED	--rubric-to-property-passthrough